王杰
王杰
Hi, I used this parameters `-P20 -k64 -m5 -R00`(which removed `-i` parameter) and the generation speed of result file is much faster than before! Now it can generate about 3G...
I see. It seems that running this program or other programs on multiple nodes is not commonly used. Thanks for you suggestions. If needed I will try GNU parallel. Thanks...
Hi, I found the reason why `lastal` is running slow on my computation server. It is the I/O speed of our conputation system that limit the speed of result file....
Thanks for your reply. I will try it. Besides, I have another question. I used `lastal` to align human assemblies to reference genome and the parameters are ` -P24 -k64...
Yes, you are right. Finally I found the true reason why `last` is not very fast. It is the lack of space of our server that limits the speed. For...
Thanks for your prompt reply. I will try your suggestions. What I mean "called" is that `tandem-genotypes` can find(or analyze) a TR in a tandem-repeat annotation file. I used simpleRepeat.txt...
Thanks for your considerate suggestions. I'll have a try.