Jessime Kirk

Annotation as a Service

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One attractive way to speed up annotation is by creating a service which our pipeline can call to on a per-variant basis. See https://github.com/googlegenomics/variant-annotation/issues/5 for more details about a potential...

While the `allow_incompatible_records` is never explicitly set to `True`, the internals of `infer_headers.InferHeaderFields.expand` will allow incompatible records if annotation fields are passed and `--infer_annotation_types` is set.

Meaning of taskExitCode -9

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Hi, I'm trying `strelka` (version 2.9.10), and I'm running into an issue I'm having trouble debugging. The error is: ``` $ cat strelka/workspace/pyflow.data/logs/tmp/taskWrapperLogs/000/041/pyflowTaskWrapper.signal.txt [2023-07-31T23:51:21.730936Z] [1b03a2a20c84] [330_1] [pyflowTaskWrapper:CallGenome+callGenomeSegment_chromId_011_chr12_0001] [wrapperSignal] wrapperStart [2023-07-31T23:51:21.749836Z]...

This is a cool tool, and I really enjoy the images I've gotten from the Demo. I was hoping one of two things were possible, and I'm wondering if I'm...

Otherwise you end up with `Pipfile not found! Aborting!`