Jennifer M Shelton

If we leave this as instructions to run the programs from the terminal we should suggest that they may need to try the command using a path that starts with...

Then what if we describe it that way? "If you are already comfortable with the command line or would like to try your hand at it before the workshop, run...

Could I add the BEDPE format to the list of additional data formats? The format is described here https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format

I had been using older versions of synapseclient (2.3.1) but recently an attempt to install the older version is failing. I'm not sure which dependency(ies) have a new releases that...

Thanks @heewookl, the overlapping regions will pull the same primary read once for each of the regions in the overlap (leading to multiple primary alignments in the output). I have...