JediKnightChan

Results 9 comments of JediKnightChan

Previous versions didn't seem to work. Working: ``` {% load i18n %} {% if querystring %} {% if label %} {{ label|safe }} {% else %} {% trans "more" %}...

Well imagine 10 years passed but radios are not working with vue normally still.

Does it affect only test (and I can proceed with the real pipeline usage if I have this error) or the whole pipeline? Are there any solutions like using older...

> @JediKnightChan I am afraid it affects the whole pipeline. For now, just specifying an older snakemake version 6.3.0, i.e. adding this line > > `- snakemake=6.3.0` > > to...

Thanks for claryfing about datasets. Now I tried repeating all the steps including fix for snakemake after ``` rm -rf aMeta conda remove -n aMeta -- all ``` However, test...

> @JediKnightChan could you please double check that you have enough RAM (at least 10 GB) and disk space (a couple of GB). Also could you post or attach the...

> Did you unzip the library.fna.gz file after downloading? Indeed, it was the issue. After unzipping and specifying the .fna file in config, I had another error: ``` [Fri Jun...

> How many samples are you analyzing? Are they deep-sequencing data? How many organisms have your KrakenUniq detected (can be checked in `results/KRAKENUNIQABUNDANCE_MATRIX/krakenuniq_abundance_matrix.txt`)? Also, did you by any chance modify...

``` # Breadth and depth of coverage filters, default thresholds are very conservative, can be tuned by users n_unique_kmers: 1000 n_tax_reads: 500 ``` Even with these settings I get more...