Jean-Du

Results 6 comments of Jean-Du

As an example, this [spm file](https://drive.google.com/file/d/1qWwXFDSUpAy_slZ_xKA7BS6KTeXQkya6/view?usp=share_link) contains grains that are too high and aren't of interest (see [processed](https://drive.google.com/file/d/1qYxncHLmXA0GOuoOVdeeGcfifM-7MDOs/view?usp=share_link) and [masked](https://drive.google.com/file/d/1H2XZDdR7xf-tDUfjnZQjigO7E7MYyBv0/view?usp=share_link) images). If this feature request is implemented, grains circled in...

@ns-rse Hi, I think this feature request is slight different from #154 as it's about user configurable grain removal in the grains section, whereas the scar removal is in the...

Hi @ns-rse , thanks for your thoughts! I would like to clarify that removing those grains would not lead to blank regions, as this step would happen in 'grains' and...

This would function in a similar way to `area_thresholding` except that it's based on height. I recall @SylviaWhittle saying this is relatively straightforward to implement?

Config file for reference: ``` # Configuration from TopoStats run completed : 2023-06-01 17:44:31 # For more information on configuration : https://afm-spm.github.io/TopoStats/main/configuration.html base_dir: G:\My Drive\PhD\Data\HU_project\Tests\High_objects_test output_dir: output_new log_level: info cores:...

Main things to consider: 1. The relevant code is found in [`measure_bending_angle` in dnatracing.py](https://github.com/AFM-SPM/TopoStats/blob/bc13c4caf798175fa08df52afb15df99690637fb/topostats/tracing/dnatracing.py#L1070) 2. The measurement is only performed once per molecule, so the results can be easily intergrated...