Taotao Tan
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Taotao Tan
I had the same issue in the last few days. Here is one possible reason: the genetic map file has repeated telomere cM positions. One example is: 22 16050408 0...
Same issue here, using shapeit5 installed from conda
Hi, lambda = 0.5 means it's deflated, not inflated, which means you might have too many type 2 errors (false negatives) for AFR. Indeed Tractor is not optimized for imbalanced...