Julie Segueni

"Missing pair end parameters:mean stdev" - different read lengths creating problems?

9

Hi, I'm trying to run smoove using the docker container. I have 12 BAM files with different read length (50 and 86). 0 reads were removed during the filtering phase....

Incompatibility issue with cooler=0.9.1

5

Hi everyone, I noticed an incompatibility issue with cooler 0.9.1. Versions: python 3.10 hicexplorer version 3.7.2 cooler 0.9.1 numpy 1.24.2 Command `hicInfo -m matrix.cool` Output (error) `AttributeError: module 'cooler' has...

Joblib library error and ValueError

2

Hello, I'm trying to use hitad but I've encountered several errors. First error: when trying to use hitad on the supplied GM12878 cool file, I get the following error: `TypeError:...