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                                            JMStorer

Huge discrepancy in RepeatMasker lists between the UCSC version and the NCBI version

@pliang64 Greetings! I am working on a full response as we speak. I was hoping to have one last piece of information in order to respond to all of your...

Huge discrepancy in RepeatMasker lists between the UCSC version and the NCBI version

To fully respond to your inquiry, we have run buildSummary.pl, a utility provided as a part of the RepeatMasker (RM) package, on the NCBI https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_rm.out.gz file as well as the...

Huge discrepancy in RepeatMasker lists between the UCSC version and the NCBI version

@pliang64 I analyzed the insertions you indicated in list analysis above, specifically for the 9 insertions that you indicated were missing from the T2T output. After searching the original T2T...

RepeatMasker output .tbl file identifies no library elements when using Dfam library

Barbara, Greetings! The command: $ python famdb.py -i Libraries/Dfam.h5 lineage brassicaceae -ad does indeed show the full lineage. However, using these settings, there is a '[0]' behind each species name...

RepeatMasker output .tbl file identifies no library elements when using Dfam library

> Responding again to JMStorer. I am sorry, are you one of the repository owners? Are you another user? Were you trying to advise me on a course of action,...