JHancox

**Is your feature request related to a problem? Please describe.** If you submit labels from QuPath, it looks as if the polygons of all defined nuclei are used, along with...

**Describe the bug** When running cucim - accelerated dataloading in Jupyter, a lot of pink warning style output can be generated that looks like an error. **Steps/Code to reproduce bug**...

Added HoverNet Loss

11

Fixes #4672 ### Description Adds the Hovernet Loss, which takes the raw predictions from the HoverNet net and produces a Loss Tensor. Hovernet Loss added along with test script that...

**Is your feature request related to a problem? Please describe.** create_test_image_2d is great, but at the moment, you can get the class ID, but not the object instance ID. This...

Create post_processing.py

2

### Description This python script takes as input the outputs from the HoverNet network, with softmax applied to the nucleus_prediction and argmax applied to the type_prediction. It outputs an instance...

Slowness seen using PiecewiseAffineTransform compared to scikit-image version

2

**Describe the bug** The cucim.skimage.transform.PiecewiseAffineTransform seems to be several times slower than the scikit-image equivalent **Steps/Code to reproduce bug** When running the code below, I observe a 8x slowdown for...

Updated versions of TM & WM. Added Basic Workflow Test to CI. Fixed Release Script Error Fixed Issue #141

**Describe the bug** In cucim.skimage.measure, region_props allows you to pass in a numpy object and some properties work okay (e.g. bbox) whereas others produce an error when evaluated (e.g. centroid)....