cellassign

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Hi, when i install cellassign with `devtools::install_github("Irrationone/cellassign")` , i encountered this error. I tried to install beachmat and it is ok. I don't know how to fix it. Can u...

Soleilcode

Hello! I'm trying to install cellassign for my analysis but I ran into several errors when trying to install tensorflow in R. When I type` tensorflow::install_tensorflow(extra_packages='tensorflow-probability', version = "2.1.0")`, this...

martibonomi

I'm trying to install cellassign for a researcher I support at the Mayo Clinic. When I try to install tensorflow-probability, I get the error message that "--no-user" is not a...

pvo93

Error: ValueError: Tried to convert 'shape' to a tensor and failed. Error: Cannot convert a partially known TensorShape (1, ?) to a Tensor

3

hello guys, can you help me with this error? I am not sure what to do? fit

Alarabi1980

Gene cluster annotation scRNA-seq integrated data set

1

I am working through the "Introduction to scRNA-seq integration" vignette and everything is running smoothly. My problem is that once I get to the "identify conserved cell type markers" section,...

cpolk3

Dear blogger, I ran cellassign to get the results, however a lot of the cells are still unassigned. I wonder what the cause of that is.

Romhop

module 'tensorflow' has no attribute 'reset_default_graph'

4

I have Tensorflow installed. When I check the version, it is 2.12. tensorflow::tf_config() 2023-02-27 15:55:21.780906: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations....

keenhl

> pbmc.1k.sce

Romhop

fix the issue #93 "Error: Cannot convert a partially known TensorShape to a Tensor: (1, ?)"

sbwiecko

Hello, Thanks so much for the very useful tool! I am having some issues using the scvi implementation of CellAssign and I wanted to share my results with you. I...

agalvezm