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`addGeneIntegrationMatrix` Error in slot(object = object, name = "features")[[layer]] <- features: more elements supplied than there are to replace Traceback:

@immanuelazn could you please guide me how i can fix this error projHeme5

ArchR used for single sample .tsv file

Hi, Currently, I'm using the ArchR package for analyzing an scATAC-seq sample, and I have only one .tsv file. I would like to identify transcription factors from my input data....

Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.

while im using latest version of seurat and seurat object i got an error related to mentioned #2212 thats why i have changed Seurat and SeuratObject version into "Seurat_4.3.0.tar.gz" and...

Error in H5Fopen(file, flags = flags, fapl = fapl, native = native) : HDF5. File accessibility. Unable to open file.

[ArchR-addMotifAnnotations-1e0814768ecfe3-Date-2024-12-07_Time-14-59-12.910763.log](https://github.com/user-attachments/files/18046606/ArchR-addMotifAnnotations-1e0814768ecfe3-Date-2024-12-07_Time-14-59-12.910763.log) i have generate these file via using threading=1 Merged.proj2

Using ArchR for scATAc-seq

@immanuelazn

`heatmapCodex`: ERROR while rich displaying an object: Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found

@danli349, have you fixed this error? I'm currently facing the same issue. If you have fixed it, could you please help me solve this error? Thank You

Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was not found

Hello teacher please answer my post i need this on urgent base i got an error related to Error in grid.Call.graphics(C_downvppath, name$path, name$name, strict): Viewport 'Norm. Enrichment -log10(P-adj) [0-Max]_heatmap_body_1_1' was...

How label Group list after integratin scRNA-seq and scATAC-seq data

could you please respond on my issue 04/07/2025 10:52:28 "Immanuel Abdi" ***@***.***> wrote: Hi @IqRaZaFaR16! Thanks for using ArchR! Please make sure that your post belongs in the Issues section....

How label Group list after integratin scRNA-seq and scATAC-seq data

I am currently using ArchR to analyze scATAC-seq and scRNA-seq data. In the tutorial, it is mentioned that a group list is generated by assigning clusters from the scATAC-seq data...