WHUANLEE comments

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                                            WHUANLEE

Recipe Database returns empty file

Hi @JamesCHub, Thanks for the guidance. A layman's question: why is StringIO needed?

‘ from sklearn.gaussian_process import GaussianProcess’ error

Hi, A layman's question: why do you need to change the shape of `xdata`: xdata[:, np.newaxis]? In another word, why the `gp` requires input in that shape when a one...

Update Dockerfile

thanks. have you figured out what was 'wrong'?

Error with EpiNano Predict

Hi @agouru55 , It's my bad for this late reply. The error msg indicates that the column number that you passed is not valid. Do you mind sharing a few...

about RRACH sites

Hi @xieyy46 , I'd recommend you refer to https://www.nature.com/articles/s41467-019-11713-9 for thresholds srtting up. Hope this helps.

Error when using the Time Series K-means with data of variable length

> Found a bug in my code. > > Issue can be closed. Hi @falknerdominik , How did you fix the issue? Thanks.

Error when using the Time Series K-means with data of variable length

Thanks @falknerdominik . this makes sense to me.

annotate translocations with svtyper

Hi Svtyper developer(s), I'd also love to know the possibility of designating translocation from SV callers. Thanks in advance!

error runing epinano_variants.py

> Hi @enovoa Thank you very much for your help. I can run the docker. I also have several questions to run epinano > > 1. What is output of...

error runing epinano_variants.py

> The error come from the fact that sam2tsv.jar has change his command line usage, now it takes "-R" instead of "-r" for reference file. Unfortunately, EpiNano fail after the...