Homa Papoli Yazdi
Homa Papoli Yazdi
Hello, Did you find any way to solve this problem? I am running the `psmc_plot.pl` script and I am getting the same error. Thank you! Homa
Thank you very much for your reply. I worked a bit more with the data and I still get the same result. The data are of 2000 SNPs (genotypes) in...
Hi again, It was indeed a too much large region. I took a smaller region of about 50 SNPs (about 35 Kb) and now I see a peak in my...
Very interesting, I just converted the length of region to Kb, keeping everything else constant. The result changed drastically: Why would this change the output? It's really interesting.
Thanks a lot for your reply. That makes a lot of sense. I'd like to obtain the sex-averaged recombination rate but I just thought that since X does not recombine...
Sorry, another question. I downloaded smudgeplot using conda. However, I cannot get the top and right-side histograms. I tried to add these myself but I think I haven't been totally...
Hi Kamil, Thank you so much for your quick responses and the time you put in this. The organism is a flowering plant called Lithophragma bolanderi. The tetraploidy nature of...
This is already great! Thank you so much and good luck with the course!
Thanks for your reply. The genome assembly is good since it was put into chromosomes by linkage maps and in addition, it was improved using optical mapping. Then the problem...
Another question, how would sample size impact calculation of LD decay? Would I expect to get a smaller or larger value of LD decay for a small sample size?