Henrik

Hey, sorry for bringing this old thread up again but I am wondering if there is any work on gpccpg methylation calling with R10 flow cells?

I just encountered the same problem. Furthermore, the `parse2 --expand / --no-expand` mode in `pairtools 1.0.3` does not seem to perform combinatorial expansion and only outputs the unmodified pairtype. Maybe...

I tried it with the new version `pairtools-v1.1.0-fix` and it still does not work for me. This is the command I used: ``` pairtools parse2 --output-stats file.pairs.stats -c GRCh38.rg.fa.fai --single-end...

Thanks, this seems to be working now. I have a follow up question to the `--single-end` mode but I can also shift this into a new issue. But this might...