HastingsGreer
HastingsGreer
Quick and easy reproduction: https://colab.research.google.com/drive/1n1t0525CigneZ--2QTxSsiPsKXQ6LKaP?usp=sharing (There is no output when it segfaults, the notebook just restarts with an error message)
Hi! As much as I bragged about getting spacing and orientation correct, it looks like I messed it up somewhere. Could you post the output of this program for the...
Our approach handles differences in spacing well, but not yet differences in axis orientation. The current best workaround when images have different axis orientations ( itk.Image.GetDirection() ) is to resample...
I have now verified that this works. Sorry for the delay!
Thank you for the detailed report! We will work on this
Hi! I have added a test to verify that unigradicon-warp works as expected on labelmaps, see https://github.com/uncbiag/uniGradICON/pull/20 . I haven't been able to replicate your issue on a generic label...
Ok! The test now fails, matching your report. It looks like itk doesn't support warping signed int labelmaps, which is surprising but knowing ITK, not that surprising haha. A first...
Hi! Your issues should now be fixed in the linked pull request. Until we merge it to main and update the pypi package, you can use it locally with ```...
Yes, most likely the spacing, origin and direction of the segmentation mask should match the image- since they appear to have the same Size. Ideally this could be fixed in...
@lintian-a could you look closely at this? It fixes an issue brought up with unigradicon-warp, but I want extra eyes on it to make sure that it's correct