Guy Baele
Guy Baele
Problem does not seem to occur when using fullEvaluation="X" with X equal to the chain length.
Cannot reproduce - i.e. works fine - on my laptop (Mac OS X). It seems the println() statement on the PrintStream object does not generate a newline in the checkpoint...
I agree with @maxbiostat and do not support this kind of prior tweaking. When using the adaptive operator, I would suggest not to include the precision parameter and keep using...
What about using Hamiltonian Monte Carlo? Does the problem still persist? https://wellcomeopenresearch.org/articles/5-53
Hi Laura, Can you also provide the output of BEAST to the screen? Are the different likelihoods assigned to the 2 GPUs in an alternating way? Thanks, Guy
The .log and .trees file won't provide this information; we would need what's printed to screen, so on your system that probably ends up in phyleo.output (i.e. the standard output)....
Dear Laura, Best I can tell, this isn't a bug so I'm closing this issue and we can continue discussing via e-mail. Can you please e-mail me your XML file...
Need to reopen this. No matter what I try, I can't get the separate discrete location partition to run on the second GPU. There's no problem splitting up sequence data...
Unable to reproduce on an XML created with BEAUti v1.10.0 on Windows 8.1 Pro, Java SE Runtime Environment 8u181 and could run the XML without problems on the same system...
Nope, still an issue.