CATT

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BioAlignments issue

3

Hello, I'm getting this issue for some of my Fastq files. [ Info: 2020-08-02 07:06:27] Program start [ Info: 2020-08-02 07:06:28] Handing Paired-end sample: /projects/b1042/MeeksLab/abacus/6/62C51828A4DD56C3C570218C79F140DB_1_val_ 1.fq.gz [ Info: 2020-08-02 07:06:28]...

code12412f

human gdTRC support?

3

Hi, Possibly the same as to Dharamendra's question: Is it similarly straightforward to add support for human gamma delta TCRs? Best regards, Don

dchutc

可否方便提供一下CATT的docker file? 国内从dockerhub上拉取镜像非常慢，我考虑拿到dockerfile后自己在阿里云上面制作。或者：将dockerhub上的镜像同步一份到阿里云上，方便国内用户使用

wangshun1121

Use of CATT for non-human T cell receptor sequence

1

Hello, I really like the way you are using these tools to characterize T cell receptor sequence in Human, I have pulled the Docker image and try to use it...

Dharmendra-G-1

We have used CATT to analyse our TCR-Seq reads, but the output files lacks either of the genes for specific CDR3. If V-gene is present, then J-gene is absent and...

harshitsaurabh

nested task error: AssertionError: Multiple concurrent writes to Dict detected!

2

你好，catt在Ubuntu中似乎不支持多线程，否则会报错，请问如何解决？ 运行“catt -f testSample.fq -o testSampleOutput -t 2” 出现报错：ERROR: LoadError: TaskFailedException nested task error: AssertionError: Multiple concurrent writes to Dict detected! Stacktrace: [1] threading_run(fun::var"#137#threadsfor_fun#199"{var"#137#threadsfor_fun#158#200"{DefaultDict{DNAKmer{23}, Int64, Int64}, Vector{Myread}, Vector{Regex}, Vector{Regex}, Vector{Int64},...

songofbin