GuoBioinfoLab
Use of CATT for non-human T cell receptor sequence
Hello, I really like the way you are using these tools to characterize T cell receptor sequence in Human, I have pulled the Docker image and try to use it for non-human sample i.e. pig. I am interested in characterizing T cell receptor sequence for Pig. Can you please let me know if I can change reference seq in your docker image/ Dockerfile, that would be very helpful and much appreciated.
With Regards, Dharm
Hi, Dharamendra, sorry for the late reply and thanks the advise.
Indeed, people can change the reference in the docker image in /catt/resource/ and configure the setting in /catt/reference.jl. But it's a little complex to build reference in format that CATT required. I will make it possible in next version.
As for now. I updated a beta version of CATT that can handle the TCR of pig. Please re-pull the Docker image as guobioinfolab/catt:dev and run with options --species pig.
Feel free to tell me any problems and advise. (I will response much much more quickly this time)
