Michael Savage
Michael Savage
Thanks for your advice, I have been trying to get this working for a while! @cowenowner I would be really interested in using the post-processing script you mentioned when you...
Hello Siddhartha, Would you mind pointing me in the right direction for the cluster to probe channel mapping? Which phy output holds this information? I am trying to figure out...
@SiddharthaJoshiLC Thank you very much for the work-around. I am already playing with phy, which has lead me down this particular rabbit hole. I am trying to create my own...
Hello Laurenz, These are just the first forty clusters in this particular recording so a mix of good cells and MUA. I understand that kilosort calculates center of mass and...
See issue #383 try using the ``try catch`` suggestion. That seemed to work for me. Michael
See #383, this worked for me
I had the same error and was extremely surprised to see that this fix worked! Thank you
You need to press the save icon in phy then look in the cluster_info.tsv file. One of the headings is the best channel for the cluster. Best, Michael
I do not know for sure but if you are comfortable writing a plugin this may do the trick https://phy.readthedocs.io/en/latest/plugins/#saving-cluster-metadata-in-a-tsv-file Best, Michael
This is a known issue with Kilosort 3. See this for a somewhat workaround: https://github.com/MouseLand/Kilosort/issues/429