Giovanni Pasquini

Test between two clusters of a Scanpy object

6

I am having hard times in performing a simple Wald test on two specified clusters of a data I annotate the sample description of my Scanpy AnnData. To test one...

Command Line Interface not working

3

Hello, I am trying to use Velocyto on the cluster of my institute. I followed the Installation Guide: $ pip3 install --user velocyto Then: $ velocyto --help -bash: velocyto: command...

mnnpy.mnn_correct returning a Tuple

1

Here is a reproducible code for the error: ``` import scanpy as sc import scanpy.external as ice from itertools import cycle pbmc = sc.datasets.pbmc68k_reduced() pbmc_corrected = mnnpy.mnn_correct(pbmc, batch_key="phase", save_raw=True) ```...