KailingTu

Issue about MotifSeq.py.

1

Hi James, I ran the MotifSeq.py in the example dir of SquiggleKit like this: `python ../MotifSeq.py -p test.fast5 -m CATCTATCCAGGGTTAAATT.model > test_kmer.tsv` And it comes out with the error below:...

Hello ! The software ran successfully in the example dataset. but I noticed some of index sequence is different from the Supplementary Table 5 in paper 'Single_nucleus analysis of accessible...

abpoa_add_graph_sequence assert(0) on zero-length input → Python process aborts

1

Hello ! I got following error when I'm trying to use abPOA algorithm. When any sequence in the input list has length 0, abPOA prints `[abpoa_add_graph_sequence] seq_l: 0 start: 0...