Gin-Wang
Gin-Wang
> Hi @Gin-Wang , > > 1. Would you show me the parameters when you ran GSEApy and GSEAv4.0 ? It shouldn't be such difference. One more thing is that...
> What's your command for GSEApy? GSEApy use permutation type `gene_set` and ranking metric with `log2_ratio_of_classes` by default. > > 1. for png question, just save your figure in pdf...
sorry about my numbers of questions. There is another quetions in using GSEApy: I have a matrixs with 3 or more groups, can i compare them with each other such...
i met same question using prepDE.py updated 8 days ago. Here is the error printed in the screen. Error: could not locate transcript STRG.2470.1 entry for sample neg2 Traceback (most...
@gpertea thanks for your answer, i tried it with "-v" just now and met the similar question and here is the log: python2 6.prepDE.py -i 5.ballgown -v >processing sample neg1...
i'm glad that it may help, and thanks again for the great software stringtie and your work