Gayathri142
Gayathri142
Thank you for your explanation.
Hello, can you please elaborate a bit more about this? So when trying to generate tfrec for single ended data, what would the input be? Right now it takes a...
Thank you. I have generated a tfrec file for single-end sample using seq2tfrec_kmer.py. However, when I try to run 'predict_DeepMicrobes.sh' it gives me an error saying the paired-end file is...
Hello, We have a GPU instance with the computational requirements mentioned in the paper. When we are training the model for one reference what should the num_classes parameter be? We...
Thank you for your reply. Where should it be changed? Should it be changed internally in the scripts or as a parameter? We are still getting errors when we just...
Hello, where can I find the pretrained model and weights? Thanks
Okay, please correct me if I'm wrong and provide more guidance: So for the 1500 reference simulated reads, 1. they must be concatenated into one big fasta file and sequences...
Thanks. Also, how long did the training take for you on 120 genus genomes? and what was the computational environment? I would like to make an estimate for the time...