Dirk Willrodt
Dirk Willrodt
Hi, I just realized that cablastp-extract appends `*` characters to my protein sequnces: Input ``` >tr|R4XQ05|R4XQ05_ALCXX MTMDSTIYLTLWAVLAFVSWLIVAGGAVLAVFSRAIKDTTFERIGLAAVSLTATGAACRIFMAGWASAGDAALAA SAAFYVAAVTAKHIRKPTL ... ``` Output ``` >tr|R4XQ05|R4XQ05_ALCXX MTMDSTIYLTLWAVLAFVSWLIVAGGAVLAVFSRAIKDTTFERIGLAAVSLTATGAACRI FMAGWASAGDAALAASAAFYVAAVTAKHIRKPTL* ... ``` Is there a...
## Version number proposal using `gt --version` prints besides other information `gt (GenomeTools) 1.5.11` (with the current master). The last Release was 1.5.10 so there is not really a 1.5.11...
## Problem description following tests did fail, most of them with errors originating from valgrind, some just not finishing on time (dots indicate groups of tests): - gt genomediff ......
this assertion failed on one of the tests with keyword gt_splicesiteinfo https://github.com/genometools/genometools/blob/master/src/extended/splice_site_info_visitor.c#L162 the seed was 792592375 but I didn't gather more info as it was nearly two in the morning...
The pull request #410 added spaces to a usage of `GT_LLU`. I would like this to be added to all of these, first as we see it is needed for...
z-shell and bash allow for customized completion files either write a script or a direct (possibly hidden) option for gt to print out such a file.
the list of tools is quite long, some tools, like csa and cds do similar things, in this case for gff3. These could be put into one toolbox, to shorten...
the disc_distri class can not handle functions that fail with GtError. I will have to change that, but as this is a public API I think the most compatible way...
as I mentioned here: #68 it would be nice if there was something to mark functions as deprecated in the docu. One could mention it in the comment, but changing...