Gabriel Al-Ghalith

Support AVX512F

6

Since raxml-ng relies on libpll, maybe this feature request is best lodged there rather than here. A quick look shows a similar feature request open since 2013 but presumably for...

Hello, in experimenting with graph pruning options, I noticed after no more tips are removed, **each subsequent cleaning round reports removing the identical number of unitigs**. This is suspicious as...

Automatically detect and cast variables to expected type(s)

4

I have bumped into issues a few times where the expected formats for the inputs to biglasso turn out to be invalid, so I'd like to propose a set of...

Segfaults on update due to missing package.

10

Please see: https://community.clearlinux.org/t/segfault-on-update-due-to-missing-package/8308 Complete showstopper. Total breakage. Security holes. Everything bad because of a fundamental failure in package management and use of worthless "delta" packages that save no space but...

Total genome counter in log is off (warning message)

1

Funny little minor glitch. I think it's using the counter for "genomes passing animo acid filter" instead of the total. This leads to fun warnings like: `[2024-04-25 14:25:09] WARNING: 2...

Fails to compile

1

Clear Linux, Qt5. All dependencies satisfied per ./configure. zbar-0.23.93 ``` /usr/bin/mkdir -p qt Iqt -DQT_X11EXTRAS_LIB -I/usr/include/qt5/QtX11Extras -I/usr/include/qt5 -DQT_WIDGETS_LIB -I/usr/include/qt5/QtWidgets -DQT_GUI_LIB -I/usr/include/qt5/QtGui -DQT_CORE_LIB -I/usr/include/qt5/QtCore -I./include include/zbar/QZBar.h -o qt/moc_QZBar.cpp make[2]: Iqt: No...

Similar to enhancement request on the old tracker from 2013: https://app.assembla.com/spaces/phylogenetic-likelihood-library/tickets/72-port-likelihood-function-xeon-phi/details# Cross-posted from: https://github.com/amkozlov/raxml-ng/issues/16 Cheers! Gabe

Request: Support for Gzip

7

# Issue Report ## Please describe the issue: Gzip is, by far, the most commonly used format to compress sequencing data, including fastq files generated by your platform. gzip files...

Flash attention / Context quantization. K and V quant settings are unavailable.

2

The current series is unusable for me because I use the full 128k context window on a 16GB GPU. To do this with Phi-medium or Llama 3.1-8B, requires setting the...

Requires internet connection for base install

13

This was supposedly fixed in 2019. But with absolutely nothing configured or installed, no bundles selected, here's what the live installation CD does.  When it fails, I get kicked...