Gian M. Franceschini

Installing on Ubuntu 22.04 leads to the following errors. Any hints? I was thinking to upgrade to Pro, and I would like to get the Desktop version working first. Thank...

Higashi stuck on training at higashi_model.train_for_imputation_nbr_0() on SLURM system

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Good morning, Asking once more for your input on deploying Higashi! I have set up a test run that I could efficiently run locally on my NVidia GPU (chr21, 1mln...

First of all, congratulations on this work; looks terrific! I just noticed that some curly quotes on line 68 of `logger.py` caused me some troubles in the execution of training...

Hi, thank you for developing AAnet! While running the tutorial I encountered the following error: `ModuleNotFoundError: No module named 'tensorflow.examples.tutorials'` Apparently, that module containing MNIST is no longer supported. I...

Error when running `scHicCorrectMatrices`

1

I encounter the following error when running the correct matrices command. ``` scHicCorrectMatrices -m ./tmp/merge/ramani_normalized.scool -o ./tmp/merge/ramani_corrected.scool --threads 20 ``` ``` ... DOne i: 6 DOne i: 7 DOne i:...

Good morning, I am encountering some errors while reprocessing single-cell level data downloaded from SRA. The issue is the way read names are split in the part devoted to contact...

NaNs in prediction.scores cause FindTransferAnchors to fail

2

### Issue Description Dear developers, we just stumbled upon this issue. When running the following code and other analyses, NaNs are generated in `prediction.scores` inside `FindTransferAnchors`, causing the following error....