Greg M. Fleishman
Greg M. Fleishman
Happy to share it! I can make the suggested changes, but will do it after the symposium.
New updated PR submitted where I actually follow through with the requirements for a merge.
Maybe the only issue to discuss is I added my own dependencies to the setuptools files - like dask, and my little package for building cluster: ClusterWrap. I've left these...
Mi Marius - sounds good I'll wait until the contrib repo is set up. Is it too much to ask for you to notify me here when that is complete,...
@carsen-stringer @marius10p I've done a major refactor of my distributed Cellpose implementation. The current state is far more readable and easy to learn. It is also functionally superior to my...
@maweigert Just finished the PR :) !
Chiming in late - and perhaps with less useful information - and I haven't looked at the 2D NMS code: KDTree could theoretically help in 2D as well, but because...
Hi Martin, Uwe, and Marvin - Also - thanks for a great tool and very helpful examples and documentation. I'm also having an issue with stardist representations at the boundary;...
Thanks Marvin, that's super helpful, I think you're probably right that this is the relevant code to modify for my data. However, this loopy python code is not practical to...
Wow, I'd heard of numba but had never tried it. That's awesome! I suppose a vectorized version of the ray shooting would also speed things up - but seems unnecessary...