ExPecto

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About Constraint violation score

10

Hi, I ran into some problems when predicted mutation effect using ExPecto, which are listed as follows: 1) in my input file *.vcf, whether I should restrict mutations within transcriptional...

kmtiny

Hello! Is it possible to obtain output similar to that of https://hb.flatironinstitute.org/sei/, option Beluga. Files like: xx_FEATURE_evalue.tsv, xx_FEATURE_zscore.tsv etc. ? What would be the sequence of calls and output files?...

stepanv1

How to load the model shown in this repo

4

Hello, I have a very stupid question. Does anyone can tell me how to open these saved model whose suffix are .dump, .save and .model. Thank you very much!

houruiyan

GRCh38 vs hg19

2

Hi~Dr, thank you for your package. I would like to ask, beluga model is pre-trained with hg19, while the scRNA-seq data is mapped to GRCh38 genome version, so is it...

Miaoyuanyuan777

Hi, would it be possible to get the predicted tracks from Beluga for each gene before the spatial feature transformation? Thanks!

rastogiruchir