Friederike Biermann
Friederike Biermann
I fixed it myself by just copying the topology folder files related to trp parsing of mdanalysis 2.7 into the topology folder of mdanalysis 0.20 :)
Hi, if your issue persists, i can maybe just send you my mdanalysis + pycontact dirs :)
You have to adjust this to the TRP version you are actually using: https://github.com/MDAnalysis/mdanalysis/pull/4052/commits/d3e5d12a22554e2f4afcfa9951b2d04164330b93
Sure, I am using Pycontact 1.0.4, I am not sure if this is the develop version. Best Frida
Thank you :)
I think the NCBI API changed its syntax. Try out this PR where I fixed this specific problem: https://github.com/gamcil/cblaster/pull/115
I think this issue should not be closed, as the PR was not merged yet and I expect all users to be affected by this issue. It's really hard to...
> @FriederikeBiermann According to the PR, I modified the corresponding two lines of code, but the error still occurs. > > ``` > Traceback (most recent call last): > File...
> Yes, I have modified the remote.py and the version of cblaster is latest 1.3.19. If you put in a preint statement that prints out the URL it uses to...
> Hi, this is the output after adding the URL. > > ``` > [11:35:19] INFO - Starting cblaster in remote mode > [11:35:19] INFO - Launching new search >...