Fred-07

Another " Failed to complete command task: 'generateCandidateSV_0000' "

3

Manta is launched as an LSF command requesting 8 cores. It fails on particular data from 1000 genomes (HG002, HG003, HG004), but works on internal samples. All samples (1000 genomes...

Looks great but would need an update to solve issues with deprecated versions of java, gradle, etc ``` ./gradlew clean jar FAILURE: Build failed with an exception. * What went...

Variant calls after local realignment : is it the most accurate ?

3

Dear all, I would like to share an observation with you. Deepvariant reported a lot of variants in a region where no reads are mapped. It is the consequence of...

Having more than 1 control after similarity search

1

Dear Vincent, ExomeDepth can end up with only one control after the 'correlation' search. Having a single sample as a control can be problematic. Would it be possible to add...