Fatih Tiras

hi Marcus, thanks for your response. I am adding the last 25 lines of log.txt file DBG 21:19:56 : JoiningMain: Mapper033 --- MainProcess-MainThread megalodon.py:995 DBG 21:19:56 : JoinedMain: Mapper033 ---...

Hi @PengNi , thanks for the quick response. I am currently new in this field so the last step might be so complicated for me. but ı can work on...

hi @rowanhowellGE , sorry for my silly question I did not downgrade my scipy. I tried conda remove/ uninstall and remove scipy package and reinstall again also. Could you say...

Hi @rowanhowellGE , I tried but when ı checked the version with "conda list| grep "numpy\|scipy" " it shows the version as numpy 1.23.2 and scipy 1.9.0 it was not...

Hi @rowanhowellGE , I tried removing with conda remove scipy but it says there is no package as scipy. I am confused ..

Hi @rowanhowellGE , yes, it might be ı am going to remove my environment and rebuilt it again. thanks for your time. have a great day.:)

hi @PengNi , sorry again me ı wanna ask a quick question which might not be related your package. the command `python /cluster/lrcfs/2397405/bin/deepsignal2downloaded/call_modification_frequency.py --input_path sample_fast5s.CG.call_mods.tsv --result_file sample_fast5s.CG.call_mods.frequency.tsv` was working fine...

Hi @PengNi many thanks for quick response. have a great days:)

Hi @wdecoster , I have 2 versions of methplotlib in 2 different env. I used `methplotlib -m age21bc15.sorted2_mapped.bam -n age21freqquency -w 15:23000000-25500000 -g gencode.v39.annotation.gtf.gz` command. The version 0.8.0 got the...

yes you are right ı tried to see what come up and inform you about the previous version. Also, the latest version looks working but lots of red is normal?...