Farzan Taj

May I add that the vocabulary/mapping associated with the intermediate object would be very useful in indexing/tokenizing a new dataset (as mentioned above). I hope this can be achieved if...

Thank you! Just making sure that I'm doing this correctly: ```R > text1 text2 text3 toks1 (toks2 indices pat (rep # Remove unseen words > (toks2 # Replace tokens with...

Hello @NarineK, thank you for your example above. However, I'm currently using the AttentiveFP model (https://github.com/pyg-team/pytorch_geometric/blob/master/examples/attentive_fp.py) from Pytorch Geometric, which in addition to `data.x` and `data.edge_index`, it takes `data.edge_attr` and...

Alright, I think I'm beginning to understand how to work with this, so far I have: ```python def custom_forward(graph_x, omic_data, graph_edge_index, graph_edge_attr, graph_smiles): batch = torch.zeros(graph_x.shape[0], dtype=int) cur_graph = MyGNNData(x=graph_x,...

I now understand the problem, I should not be creating a new GNN in the `custom_forward` function: ```python cur_graph = MyGNNData(x=graph_x, edge_index=graph_edge_index[0], edge_attr=graph_edge_attr[0], smiles=graph_smiles, batch=batch) cur_graph = GenFeatures()(cur_graph) ``` This...

Hi @hanao2, yes, I was able to explain my graph, and measure the importance of each feature at each node and edge. I've updated my comment above to show the...

@hanao2 My results were realistic in terms of getting some attribution score assigned to my nodes and edges. The graph in my problem represents molecules, but I can't tell whether...

I have the same issue, and I'm following the tutorial on the [reference page](https://rpkgs.datanovia.com/ggpubr/reference/geom_bracket.html). @drstormR Were you successful in finding a solution?

@drstormR, thank you, but I don't use "variable" as a column name anywhere in my code. Did you use faceting by any chance? By long data frame you are referring...

@drstormR just solved it, realized I had all NAs in one of my columns! Thanks!