Erik Danielsson

icon location Lund icon location Master student in applied mathematics at Faculty of Engineering, Lund. Bachelors student in biology at Faculty of Science, Lund.

Results 16 comments of Erik Danielsson

Add citation information following the citation file format

Closing due to merge of #1663.

Add citation information following the citation file format

Ok, I'll create a few more PRs then :)

Add citation information following the citation file format

Thanks @apeltzer! There are two more to be merged before we are done though: https://github.com/nf-core/configs/pull/397 and https://github.com/nf-core/test-datasets/pull/569

Create Nextflow code formatter

I've been investigating this for some time now, and I think writing a groovy-lint plugin seems like the most feasible approach currently. I'll share some of my observations on the...

[Custom Template] Collection of open points

Then we should add an option to skip GitHub stuff altogether, which should be rather straightforward to do. Regarding linting issue: Fixing this would require us to add all these...

Give better suggestion when modules.json file is out-of-date.

I think that a better solution would be to call the `ModulesJson.has_modules_file` from all commands that use the `modules.json` -- there is no need to have the user run another...

MirTop still broken (isomiR_perc)

This should be fixed in #1723 @apeltzer.

Exporting general stats table - missingness

Sure!

WIP: Refactor pipeline downloads command

@mirpedrol Thanks for letting me know!

WIP: Refactor pipeline downloads command

Thanks for all the feedback @MatthiasZepper ! I'll try to summarize your suggestions here to open up for further discussions and to set a path for finishing this PR: -...