Elliott Ferris

icon company University of Utrah icon location Salt Lake City, Utah icon location Bioinformatics Data Analyst at the University of Utah. Allele-level NGS alignment and analysis. Comparative genomics.

Results 5 comments of Elliott Ferris

make-gnotate, gnomAD filter field.

Thanks Brent!

make-gnotate, gnomAD filter field.

In my "slivar expr" command I include: --info (variant.FILTER == 'PASS') Does that refer to the PASS field in my VCF of the the one in the gnomad.zip file? Thanks!

make-gnotate, gnomAD filter field.

Thanks Brent. So, in making the gnotate file with make-gnotate, can I only include INFO fields? Can I not get the "##FILTER=

make-gnotate, gnomAD filter field.

Thanks Brent, It's still not clear to me how to make use of the 'PASS' field from the gnomAD VCF (v3.1) with make-gnotate and then in a subsequent Slivar search....

Error on install

I'm having the same problem described above when I try to install PyVCF on my mac: sudo pip install pyvcf ... error: can't copy 'vcf/cparse.c': doesn't exist or not a...