Alejandro Efraín Marín Peralta

According to the documentation the ```pvalue``` argument is the p-values of the genes. I guess this is a vector?? I tried ```GO_result@result$pvalue``` , where ```GO_result``` is the output of the...

Question regarding VCFs and issue with the R script

3

I'm trying to perform a 3-way model. Does the R script is limited to a maximum number of samples/features? After running ``` Rscript path/Tractor/scripts/run_tractor.R \ --hapdose path/chr21/chr21.annotated.LiftOver.dose \ --phe path/phe.txt...

Error while training

1

I have been testing gnomic in training mode, and got the next output: ``` ... -------------------------------------------------------------------------------- ----------------------------------- Gnomix ----------------------------------- -------------------------------------------------------------------------------- When using this software, please cite: Helgi Hilmarsson, Arvind S...

Hi, I am using VS Code on MacOS, with both R and Remote-SSH extensions. I am running code chunks from an RMarkdown file that is hosted in a remote server....

Installation problems

6

Hi, I'm a MacOS user facing some problems. First, I tried to install cnvkit via conda, but I was unable and got the next output: ``` Channels: - conda-forge -...

Hi, I installed CNVkit (v0.9.11) via Conda. I tried to read a BED file using ```skgenome```, as this: ``` import skgenome as skg bed = skg.tabio.read_auto('file.bed') ``` But got the...

Error while running with OpenMS experimental design format

2

Hi, Thank you for your hard work. This is an interesting project. When I was trying to test the pipeline with a custom TSV following the OpenMS experimental design format...