EdBreen

*** caught segfault *** address 0xa14d9000, cause 'memory not mapped'

4

I'm new to STITCH but I'm having segfault problems. For example see error output below. The command issued was: STITCH.R --chr=scaffold_9_RaGOO --bamlist=./TBA_EX46-HAC-Mod1-P.R2.RaGOO.PlusCpMt.sorted.dedup.bamlist --posfile=scaffold_9_RaGOO.posfile --outputdir=./ --K=450 --nGen=3 --nCores=8 *** caught segfault...

The code fails to read last line of csv if it doesn't contain a carriage return of some sort.

1

To fix this problem Change else if (!inquotes && (c == '\r' || c == '\n')) to else if (!inquotes && (c == '\r' || c == '\n' || in.eof()))...

platform x86_64-pc-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 4 minor 1.2 year 2021 month 11 day 01 svn rev 81115 language R version.string R version 4.1.2 (2021-11-01)...