张建兴
张建兴
I tried small epoch(1500) to see the performance. but the loss jumps around 0.04~0.05 and i didnt see it get smaller, is this normal? heres my dataset and hyperparams, any...
Hi, How can I find the joint cluster result? I integrated a ATAC data with 2129 cells and a RNA data with 2129 cells, but I can only find leiden_cluster...
Hi, I am running code `losses = eg.fun.transfer_to_reference(adatas, reference=ref, layer = "smoothed", features = ["Nrgn","Apoe","Omp"], n_epochs=1000, device ="cuda", verbose=True, )` and I am wondering what kind of feature the model...
Hi, Would you mind providing tutorial for sequential alignment? Like slice1 align to slice0, slice2 align to slice1, slice3 align to slice2 and so forth.... Thank you! Best regards.
Hi, I encounterd a problem when checking the result of alignment  This is adata_list (4 Anndata) AnnData object with n_obs × n_vars = 747 × 24356 AnnData object with...
Hi, I tried to tune the parameters of for STalign on my datasets but the results were not good. Would you mind helping me to choose the correct parameters for...
Hi, Would you mind sharing the processed .h5ad files in [SLAT](https://github.com/gao-lab/SLAT/tree/main)/[case](https://github.com/gao-lab/SLAT/tree/main/case)/[sptatial_multi-omics](https://github.com/gao-lab/SLAT/tree/main/case/sptatial_multi-omics)/[2.Pre_projection.ipynb](https://github.com/gao-lab/SLAT/blob/main/case/sptatial_multi-omics/2.Pre_projection.ipynb) which are `glue_rna-E11_20um.h5ad` and `glue_atac-E11_20um.h5ad` Thank you very much! Best regards
Hi, Would you mind providing **tutorial** for **"super-resolution gene expression image"**? Thank you very much! By the way, if I provide **domain labels** for the spots, is it possible that...
Hi, Thanks for your great work! I tested the pretrained RoMa on my images (not real world images; with large rotation angles), and the alignment results were not good. I...
Hi, Thank you for sharing this excellent work. I have a question though: If there is a **rotational difference** or **mirror flip** between the content image and style image, will...