Aurélien WYNGAARD

`export_to_phy` with large dataset

10

Hi, I'm trying to use the `export_to_phy` function on a rather large dataset (30 minutes neuropixels recording with 300+ units). When I try to use the function "normally", I get...

This looks very similar to the `isi_violations`, but there are some subtle differences which (in my opinion) makes it more accurate. I want to implement it parallel to the isi...

Hi! I'm using `phy`, and I wanted to make a custom algorithm to sort the different units into different categories (for different neuron types such as pyramidal cells, interneuron etc...)....

ValueError: could not broadcast input array in postprocess.run@post_process

5

Hi, I ran yass today on my dataset (64 channels for about 30min), and came across an error: ``` yass.postprocess.run@post_process 06/10/2020 15:08:26 INFO 11 units after removing duplicate units 0...

Updated WaveformExtractor.load_from_folder

6

Added the option to give a recording and/or sorting object as to not reload them if they already exist (gaining quite a bit of time and memory).

Correlogram gaussian

2

Implementing the code for gaussian-filtered correlograms computed in numba.

Gaussian filter implementation

2

This runs **very** slow (49min on a 64-channels 45min recording). Need to figure out why and fix it (for a 1s-chunk of 64 channels, it should take ~0.4s). There might...

Added remove_duplicated_spikes

1

Added remove_duplicated_spikes sorting class and wrapper function.

WaveformExtractor computing templates can reach limit open files

4

Hi, On Ubuntu, there is a limit to how many open files you can have at once (by default, I believe it's around 1,000-2,000). But this means that if in...