DrJesseHansen
DrJesseHansen
i think I sorted it out. it was the relion_Reconstruct output volume which was causing the error... evem though the volume looked fine. I re-saved in chimera and now it...
yes, but unfortunately I don't recall how. We had tons of errors during that time and eventually all got resolved. Are you running the latest ver of AF2? I remember...
ah okay, thanks Thorsten! Our IT did install the latest ver of tomotwin but apparently only alongside python 3.11. (my colleague is concurrently posting on your github with issues we...
hi Thorsten, We can't get it running yet with the new tomotwin, but I'd like to try to continue with the old version for now. However the tutorial is for...
Hey again, I don't want to bother you too much with this because it may just be an issue with the old version that is now fixed. So please feel...
hi, here's the tomogram https://seafile.ist.ac.at/f/1480f049fff94c408df4/ thanks for the feedback. Actually I'm hoping to find little blobby things bound to the filaments, so even if it doesn't find filaments I'd be...
thanks Thorsten, I just passed along the message to our IT. Jesse
hi, I received a response from our IT regarding the Conda. Also I will test the new installation and report back here what happens. From IT: conda is not our...
thanks for the response. #738 suggests adding coarse search option to yes? I had that turned off, I set it to on and am re-running the job. I'll update my...
update: it made it to the second iteration! So adding in coarse search option made a difference. Nice.