Doron Haviv

Hello, The datasets (which are public sources from https://www.nature.com/articles/s41586-021-03705-x) were processed, but the counts are not in log domain. Specifically, the counts in spatial data were normalized by cell size...

Apologies for the late response. Thank you for pointing this out, we have been seeing issues with people running ENVI on cuda11... We found that instead of installing jax with...

Hi! Thank you for your interest in our work! The plot in step 153 shows the neighborhood prediction for the single-cell data, so you would only need to apply in...

Hi! Regarding batch information. Yes, just add the `batch_key` for make sure that COVET knows to ensure that spatial neighbors are only with-in batch. You can just ran analysis on...