Domagoj Doresic

Relative: Fix return of inner parameters on objective call

1

There was a bad implementation of inner parameter returning on call of objective. Previously, the `InnerCalculatorCollector` would take note of `self.best_fval` such that it returns `inner_parameters` only in cases a...

**Feature description** Currently, if one plots the optimization parameter estimates using `pypesto.visualize.parameters.parameters(...)` the obtained plot does not indicate which parameters are plotted in which scale (lin, log10 or log). It...

**Feature description** Adapt the analytical formulas to support the log-normal distribution. This should not be a lot of changes, as the log-normal distribution is quite similar to the normal one....

Hard to swap between hierarchical and standard because of sigma

5

When one uses hierarchical estimation with a sigma parameter, they need to specify the bounds as [0, inf] and scale as linear. But then if they want to use non-hierarchical...

Profiles do not show if dropoff due to bound hitting

2

When profiling it is not currently shown whether a dropoff in the likelihood is due to the data constraining the parameter value or whether there really is some structural identifiability...

Sacess usage example or simplification of usage

3

It is a bit hard to start using sacess in pyPESTO. There is an example of usage, but it's only in the docstring of the `SacessOptimizer`. It is a place...