Chris Smith

Parameter suggestions for fixing misplaced scaffold

3

Hi, I've used RagTag to scaffold my assembly against a decent reference and the results in general look good. However there is one pseudochromosome that appears to have been scaffolded...

SignalP v6?

19

Hi John, I've got some SingalP6 output I'd like to include in my annotate stage. I've tried the --signalp method but it threw an error. I'm using funannotate v1.8.7. I'll...

Orthofiller output incorporation?

1

Hi John, This isn't an issue so much as a question/query. I've got a few genomes from the same genus that I'm predicting and annotating. I've used Orthofiller (https://github.com/mpdunne/orthofiller) to...