Diffusion-MRI
Diffusion-MRI
HI all, Kikubernetes is correct, this is failing at the inference stage and is only due to memory. We suggest allocating 16Gb of RAM (or more) when running either the...
Could you copy the full output or error log? That will help us debug where the error occurs. Thank you.
This is an error downloading the image. It seems as if you have run out of space on your hard drive? It may be worth downloading on a disk space...
That should be plenty of space. I would try the pulling the docker again (which is the first thing done when you do 'docker run'). It only needs to download...
Can you send the full output displayed or written in the terminal? I believe the error may be happening before the lines you've copied. Can you also send the names...
strange - it seems to fail right at the beginning with T1 processing. Can you confirm that your file paths are correct and also that the T1 is a 3D...
Do the files seem reasonable upon inspection? I'm surprised those files exist, the very first error encountered is the very early in the pipeline when the T1 is being read...
Hi @Vince-LD - glad you like the tool! Hopefully I can respond to all points. 1) epi_reg and no contrast in BBR. This typically happens if you are using a...
1. I'm pretty confident it is due to the T1 rather than b0. We've only seen this issue when using T1s processed from FS. I'm not sure why this happens,...
Yes - Vince-LD's solution works well. You could alternatively give it just the first (or any) b0 image. Currently the pipeline does not accept multiple b0 images, but we hope...