Dié Tang

Hi, I am running cactus for 47 genomes (~ 700 Mb per genome) alignment with 88 cores and 2T RAM. And i get this error after 'CactusSetReferenceCoordinatesUpWrapper'. By the way,...

Hi, Is it OK to use HiFi PacBio reads? Best, Dié

Export scrublet plots to .png or .pdf files

2

Hi there, Is there any way that I can save the scrublet plots (scrub.plot_histogram() and scrub.plot_embedding()) to png or pdf file? Thanks! Best Dié

Sanity Checking DataLoader error

3

Hi I am running the quick start command to check my hyena-dna installation. `python -m train wandb=null experiment=hg38/genomic_benchmark_scratch` and I got the error report below, does anyone know how to...

When calculate the unspliced reads, does UTR region included or not?