DelnazRoshandel issues

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                                            DelnazRoshandel

HLAassoc > Omnibus Test

I want to try omnibus test and I am wondering how the .bim file of reference panel should look like, should all the AA that are on the same position...

I used Michigan server for HLA imputation and now I want to used HLAassoc for association tests. I am wondering what HLAassoc uses for logistic/linear regression: dosage/genotype probabilities or genotypes...