Riccardo Spott

Freyja integration

1

Integration of Freyja for metagenomic screening of reads. Includes also a restructuring of the LCS-tool for metagenomic read-analysis.

Include artic-tools "validate_scheme"

1

Custom Primer bed-files can be tricky to set up the right way, so that Medaka will recognize them. In case of an error with the bed-file the medaka-process just fails...

Implementation of nextflow strict syntax

1

With the latest nextflow update, we want to migrate the workflow to their new strict syntax model, which is described here: https://www.nextflow.io/docs/latest/updating-syntax.html Due to our already good structure, these are...