Danielle M. Stevens comments

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                                            Danielle M. Stevens

h(simpleErrpr(msg, call)) error

Hi Hajk! Wow, thank you so much for responding so quickly! So for more context, I'm trying to group the gene families to fill out an all by all comparison...

h(simpleErrpr(msg, call)) error

Apologies for the slow response. After further investigation, you are right. The low pairwise hits returned no file due to the default parameters requiring an E-value of 1e-5. Once I...

stuck on a bridge

Hi Ryan, Thanks to all your contributions to the microbial genomics community! Hopefully, you can also help me figure a weird problem I'm having that's related to this issue. I'm...

Option to Skip the AMR detection step

I was having the same issue. My fix was updating both Bakta (v1.9.3) and AMRFinderPlus with both: ``` amrfinder_update --force_update --database /amrfinderplus-db/ amrfinder --force_update ``` Though the first few tries...

Addition of custom codon table/improve 'rare' start codons prediction

Yeah, sadly I am aware. I went through much of the prodigal's open/closed issues to see if they ever made a fix for this a month or two ago to...