Results 14 issues of Daniel Wiczew

I've moved from Ubuntu 21.10 to 22.04 and Black stopped working then. The configuration is fallowing OS: Ubuntu 22.04 Python: Anaconda with Python 3.8 vim version: 8.2.3582 Package manager: Vundle...

T: bug

Hello, I'd like to get atom indices from which compute_contacts method calculates distances. I have notice that the code uses kNN to extract closest distances from atom distances. I have...

**Describe the feature and the current behavior/state.** The feature allows for inclusion of a new layer type called Memory Unit. This layer allows for efficient memorization of the data, that...

I want to use prompt from file using `-f` options and alpaca models. Nevertheless, when I use like that, the llama.cpp first prints out the whole input. How to avoid...

Hello, I was using int Q4 alpaca model, that was converted using convert-gpt4all-to-ggml.py script. It was working perfectly until an update about a week ago (2023-03-30). At the moment I...

I am using the kaobook template for my document in LaTeX, and I would like to add the custom part name to the header. By default, the header only shows...

In the original paper, it is stated: "Another advantage of the VAMP-E based validation score is that it does not involve any inverse operation of matrices and can be stably...

Gradient_transformers was removed from Tensorflow rendering the algorithm unusable. Is there any alternative ?

I'm trying to use a new rig with H100 GPUs with OpenMM 8.1.2 and CUDA 12.2, linked into a topology as below: ![image](https://github.com/user-attachments/assets/ad03235a-14c7-48f4-8a56-f3bb561c4028) But I'm getting very strange results. While...

Funnel meta-dynamics, is meta-dynamics where we restrain ligand in a cone/cylinder-shaped potential, where the ligand expriences potential K, when outside cone/cylinder and no potential when inside. I Like here: ![image](https://user-images.githubusercontent.com/37775482/132057523-0d000fcb-03c3-4025-96d6-bbdfe1d02c33.png)...

question