David

sha256sum download failed

1

Hello there I do not succeed to download the sha256sum.txt for mm9 # Download sha256sum.txt (with wget or curl): wget https://resources.aertslab.org/cistarget/databases/sha256sum.txt # curl -O https://resources.aertslab.org/cistarget/databases/sha256sum.txt Is not working. Here is...

Hello there It's not really a feature request, more a "help required" I'm using derfinder to reannotate the Rat genome using RNA-seq data. I'm running fullcoverage() and regionmatrix() to id...

Wrong XA format and combined/psiclass_output_vote.gtf': No such file or directory

1

Hello there Thanks for having developed this tool I'm having the same problem as many but I cannot solve it (I already put this message at the end of an...

Integrating several samples, vanishing genes :)

4

Hi there. First, thanks for this very nice tool :) I have a small probleme (it's probably trivial but I'm very new to bioinformatic analysis): I have 4 differents 10X...

problem with SelectTFs

5

Hello there I'm tryingto run ScMega on 10X multiome RNA+ATAC data obtained in Rats tissus. When I run the : res

np.all(nn_cells == adata_atac.obs_names)

1

Hello there I have a small problem: When I run np.all(nn_cells == adata_atac.obs_names) I get : False I double check and the barcodes are totally the same (and there is...

Subsetting before Multivelo analysis

1

Hello ! I'm performing a multivelo analysis on a complex tissue with more than 10 well-represented cell types. When I perform the analysis on the whole sample, it work just...

Hello there Thanks for this very nice package. It works marvelously and give very interesting results. I have performed the scv.pl.heatmap step and the resulting heatmaps show clear clusters of...