DadongZhang

WARNING: 51499 : Use of uninitialized value in subtraction (-)

1

I got many warnings from converting my mutect2's output vcf to maf such like ``` WARNING: 51420 : Use of uninitialized value in subtraction (-) at /home.local/dz33/ensembl-vep/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/VariationTabix.pm line 184, line...

I merged 48 vcf output into a single vcf using bcftools in order to do some group comparisons after converted to maf format. The merged vcf looks like: ``` #CHROM...

syntax highlight shows weird color

2

I installed the plugin following the instruction but got wierd folding (to one line when open it) and the highlight looks weird  My .vimrc: ``` Plugin 'vim-pandoc/vim-pandoc' Plugin 'vim-pandoc/vim-pandoc-syntax'...

How to input STAR-SEQR output?

1

We are using [STAR-SEQR](https://github.com/ExpressionAnalysis/STAR-SEQR) for fusion detection and I am trying to visualize the data using chimeraviz. Is there a good way to input the STAR-SEQR's output? Below is some...